S Basu, S Ganguly, R R Nemani, S Mukhopadhyay, G Zhang, C Milesi, AR Michaelis, P Votava, R Dubayah, L Dunccanson, BD Cook, Y Yu, S Saatchi, R DiBiano, M Karki, E Boyda, U Kumar, and S Li, 2015. A semi-automated probabilistic framework or tree-cover delineation from 1-m NAIP imagery using a high-performance computing architecture. IEEE Transactions on Geoscience an Remote Sensing, 53, 5690-5708.

Feng Chen, 2015. Integrating semiconductor storage into the I/O stack: A tale of three approaches. Non-volatile Memory Systems for Korean Institute of Information Scientists and Engineers.

H Y Chen, S Flur, and S Mukhopadhyay, 2015. Termination proofs for linear simple loops. Software Tools for Technology Transfer, 17, 47-57.

M Peralta, S Mukhopadhyay, R Bharadwaj, 2015. Reasoning sbout security in sensor networks. Journal Concurrency and Computation, Practice and Experience, John Wiley, Special Issue on Trust and Security in Wireless Sensor Networks.

A Mahmoud and G Bradshaw, 2015. Estimating semantic relatedness in source code. ACM transactions on software engineering and methodology, (TOSEM).

N Niu, J Savolaninen, and A Mahmoud, 2015. Leveraging topic modeling and part-of-speech tagging to support combinational creativity in requirements engineering. Requirements Engineering Journal - Special Issue on Best Papers of RE'14, (S.I.REJ).

S Stackhouse, L Stixtrude, BB Karki, 2015. First-principles calculations of the latice thermal conductivity of lower mantle. Earth and Planetary Science Letters, 427, 11-17.

BB Karki, DB Ghosh, AK Verma, 2015. First-principles prediction of pressure-enhanched defet segregation and migration at MgO grain boundaries. American Mineralogist, 100, 1053-1058.

BB Karki, 2015. First-principles computation of mantle materials in crystalline and amorphous phases. Physics of the Earth and Planetary Interiors, 240, 43-69.

SK Bajgain, DB Ghosh, BB Karki, 2015. First-principles simulations of CaO and CaSiO3 liquids: structure, thermodynamics and diffusion. Physics and Chemistry of Minerals, 42, 393-404.

G Sharma, C Busch, 2015. An analysis framework for distributed hierarchial directories. Algorithmica, 71, 377-408.

G Sharma, C Busch, R Vaidyanathan, S Rai, J L Trahan, 2015. Efficient transformations for Klee's measure problem in the streaming model. Computational Geometry, 48, 688-702.

G Sharma, H Krishnan, C Busch, S R Brandt, 2015. Near-optimal location tracking using sensor networks. IJNC, 5, 122-158.

G Sharma, Costas Busch, 2015. A load balanced directory for distributed shared memory objects. Journal Parallel Distribution Computing, 78, 6-24.

G Sharma, C Busch, 2015. Distributed queuing in dynamic networks. Parallel Processing Letters, 25.

Y F Chien, W K Hon, R Shah, S V Thankachan, J S Vitter, 2015. Geometric BWT: compressed text indexing via sparse suffixes and range searching. Algorithmica, 71, 258-278.

W K Hon, T H Ku, T W Lam, R Shah, S L Tam, S V Thankachan, J S Vitter, 2015. Compressing dictionary matching index via sparsification technique. Algorithmica, 72, 515-538.

S Biswas, M Patil, R Shah, S V Thankachan, 2015. Succinct indexes for reporting discriminating and generic words. Theoretical Computer Science, 593, 165-173.



C Busch, R LaFortune, S Tirthapura, 2014. Sparse covers for planar graphs and graphs that exclude a fixed minor. Algorithmica, 69, 658-684.

G Sharma, C Busch, 2014. Distributed transactional memory for general networks. Distributed Computing, 27, 329-362.

S S Shakya, B B Karki and J Zhang, 2014. Analyzing molecular dynamics scattered data for large atomic movements. Computational Materials Science, 95, 198-206.

D B Ghosh, B B Karki and L Stixrude, 2014. First principles molecular dynamics simulations of MgSiO3 glass: Structure, density and elasticity at high pressure. American Mineralogist, 99, 1304-1314

D B Ghosh and B B Karki, 2014. First principles simulations of the stability and structure of grain boundaries in Mg2SiO4 forsterite. Physics and Chemistry of Minerals, 41, 163-171.

H C Wu, T Xia, Y Wu, and S Mukhopadhyay, 2014. Novel fast blind channel estimation and Hessian analysis for transmitter identification of digital television signals. IEEE Transactions on Broadcasting, 60, 715-723.

L Xue, S Kumar, C Cui, S J Park, 2014. A Study of Fairness among Heterogeneous TCP Variants over 10Gbps High-speed Optical Networks. Journal of Optical Switching and Networking, Elsevier, 13, 124-134.

W K Hon, R Shah, S V Thankachan, J S Vitter, 2014. Space-Efficient Frameworks for Top-k String Retrieval. Journal ACM, 61, 9.

Carbone, Harris, B Ullmer, 2014. Gibbon genome and the fast karyotype evolution of small apes. Nature, 513, 195-201.

B Ullmer, 2014. The common marmoset genome provides insight into primate biology and evolution. The Marmoset Genome Sequencing and Analysis Consortium, Nature Genetics, 46, 850-857.



B B Karki, J Zhang and L Stixrude, 2013. First-principles viscosity and derived models for MgO-SiO2 melt system at high temperatures. Geophysical Research Letters, 40, 94-99.

D Lin, X An, and J Zhang, 2013. Double-bootstrapping source data selection for instance-based transfer learning. Pattern Recognition Letter , 34, 1279-1285. 

B Bohara and B B Karki, 2013. Visualizing microscopic structure of simulated model basalt melt. Computers & Geosciences, 57, 166-174.

D Sathiaraj, and E Triantaphyllou, 2013. On identifying critical nuggets of information during classification tasks. IEEE Translation On Knowledge and Data Engineering,  25, 1354-1367.

Y G Debessu, H C Wu, H Jiang, and S Mukhopadhyay, 2013. New modified turbo decoder for embedded local content in single-frequency networks. IEEE Transactions on Broadcasting, 59, 129-135.

N De Koker, B B Karki and L Stixrude, 2013. Thermodynamics of the MgO-SiO2liquid system in Earth's lowermost mantle from first principles. Earth Planetary Science Letters, 361, 58-63.

O Soysal and J Chen, 2013. Object recognition by spectral feature derived from canonical shape representation. Journal of Machine Vision and Applications, 24,  855-868.

M Peralta, S Mukhopadhyay, 2013. Code-change impact analysis using counterfactuals: theory and implementation. International Journal of Software Engineering and Knowledge Engineering, 23, 1459-1486.

W K Hon, M Patil, R Shah, S V Thankachan, 2013. Compressed property suffix trees. Information and Computation, 232, 10-18.

W K Hon, T-H Ku, R Shah, S V Thankachan, J S Vitter, 2013. Compressed text indexing with wildcards. Journal Discrete Algorithms, 19, 23-29.

W-K Hon, T-H Ku, R Shah, S V Thankachan, J S Vitter, 2013. Faster compressed dictionary matching. Theory Computer Science, 475, 113-119.



C Busch, R Kannan, and A V Vasilakos, 2012. Approximating congestion + dilation in networks via 'quality of routing' Games. IEEE Transactions on Computers, 61, 1270-1283.

B Ullmer, 2012. Entangling space, form, light, time, computational STEAM, and cultural artifacts. Interactions, 19, 32-39.

G Sharma and C Busch, 2012. A competitive analysis for balanced transactional memory workloads. Algorithmica, 63, 296-322.

S Wei, R Kannan, V Chakravarthy and M Rangaswamy, 2012. CSI usage over parallel fading channels under jamming attacks: A game-theoretic study. IEEE Transactions on Communications, 60, 1167-1175.

Q Lu, X Gao, S Krishnamoorthy, G Baumgartner, J Ramanujam, and P Sadayappan, 2012. Empirical performance model-driven data layout optimization and library call selection for tensor contraction expressions. Journal Parallel Distribution Computing ,72, 338-352.

OM Soysal, J Chen, and H Schneider, 2012. Efficient photometric feature in a hierarchical learning scheme for nodule detection. International Journal of Granular Computing, Rough Sets and Intelligent Systems, 2, 314-326.

S Srinivasagopalan, C Busch, and S S Iyengar, 2012. An oblivious spanning tree for single-sink buy-at-bulk in low doubling-dimension graphs. IEEE Transactions on Computers, 61, 700-712.

G Sharma and C Busch, 2012. Window-based greedy contention management for transactional memory: theory and practice. Distributed Computing, 25, 225-248.

J. Punuru and J Chen, 2012. Extracting non-taxonomical relations from domain texts. Journal of Intelligent Information Systems, 38, 191-207.

A K Verma and B B Karki, 2012. First-principles study of self-diffusion and viscous flow in diopside (CaMgSi2O6) liquid. American Mineralogist, 97, 2049-2055.

M Mookherjee, B B Karki, L Stixrude and C Lithgow-Bertelloni, 2012. Energetics, equation of state, and elasticity of NAL phase: potential host for alkali and aluminum in the lower mantle. Geophysical Research Letters, 39, L19306. 

S S Iyengar, X Li, A Sawant, H Xu, S Mukhopadhyay, P Iyengar, N Balakrishnan, 2012. MRI-based 4D computational modeling of respiratory motion for lung tumor radiotherapy. IEEE Computer Society.

S Devadoss, R Shah, X Shao, E Winston, 2012. Deformations of associahedra and visibility graphs. Contributions to Discrete Mathematics, 7.

M Patil, R Shah, S V Thankachan, 2012. Succinct representations of weighted trees supporting path queries. Journal Discrete Algorithms, 17, 103-108.

W K Hon, R Shah, S V Thankachan, J S Vitter, 2012. On position restricted substring searching in succinct space. Journal Discrete Algorithms, 17, 09-114.