#nexus

[example command file, calculating variable sites]
begin paup;
set nowarnreset autoclose;
log file=VariableSites replace;
execute pboot.0.nex; exclude constant;

execute pboot.1.nex; exclude constant;

execute pboot.2.nex; exclude constant;

execute pboot.3.nex; exclude constant;

execute pboot.4.nex; exclude constant;

execute pboot.5.nex; exclude constant;

execute pboot.6.nex; exclude constant;

execute pboot.7.nex; exclude constant;

execute pboot.8.nex; exclude constant;

execute pboot.9.nex; exclude constant;
end;